rs27978422 SNP Detail

Summary

• ID
  rs27978422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75512193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACACGATTA ACCTTATAAG TTTTAAAAAG TAAAAACAAG CCGATTTTAA
  GCAACTTTTA TACTTTGGAT TCCTAAACAG CACACATCTT CCTATCAGAG TACAAGCCAG
  CGCTGATCCT GCTTAGCATC AAATAGCACC AGCCCATGTT CAGAGTGATC TGGTCATAGG
  Y
  CTGAATTCAG ACATTCTTAT CTGAATGCAG CAACAGTGAG TTTCTTCCTG TGCCCAACAC
  ATTTTGCTGT TTTAGATTTC CACACAAGTT TCAGAAGGAA AATGTCTGAA ATTTGATTTT
  TTCCCTCTTT TTTTTTTTTA AGATTTATCT ATTTATTTTA TGTGTATGAG TACACTGTAG
  CTGTACAGGT GGTTGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38109254	NES09262725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978422					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38109254	NES09262725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75512193 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	451 bp upstream
Rr559542	regulatory region 559542	within coordinates
Rr559543	regulatory region 559543	335 bp proximal
Rr559544	regulatory region 559544	623 bp proximal
Rr559545	regulatory region 559545	827 bp proximal
Rr559546	regulatory region 559546	913 bp proximal
Tssr18460	transcription start site region 18460	1350 bp upstream