rs27978414 SNP Detail

Summary

• ID
  rs27978414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75513829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGATATTT TCTTAGACTG GAAAAAGCTG CCCAAGGGTA
  GGTAACCTAA GTGCCAGGGT GAGCCTCGTG GTGTACGGGG CAAATGCTGC CTGCCACTTA
  Y
  GGATTCCTGA GTGTGCTCCA AGTTCCACTA CAAACTTAGC TTACGCAAGA GACAGAAGGA
  AGCAGAATGT TGGACAATTC ATGTTCTACC ACCATCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38109246	NES09262713	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		C	T	C	T	C	C	C	C	C
ss45368218	mCV25010606	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss146768203	ENSMUSSNP844411	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978414					SNP	T	T	C	T	T	T	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38109246	NES09262713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75513829 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559542	regulatory region 559542	1626 bp distal
Rr559543	regulatory region 559543	1280 bp distal
Rr559544	regulatory region 559544	992 bp distal
Rr559545	regulatory region 559545	788 bp distal
Rr559546	regulatory region 559546	within coordinates
Rr559547	regulatory region 559547	1175 bp proximal
Rr559548	regulatory region 559548	1903 bp proximal
Tssr18460	transcription start site region 18460	274 bp downstream