rs27977878 SNP Detail

Summary

• ID
  rs27977878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68905769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCGTTTA GTGAGGGTTT
  CCTAGGCAAC CAGGATGAGG TGCATACTGA ACCTTCCATT AGATGCGGGG CTTTTAAACT
  TGCAGCTCAG ATTCCAACAG GTAGTGTCAG TACTCTGCTT TATAGTTTGA AAGAAGAAGC
  TACAGGCTAT GAGTTACTCT TATAAGCATT TGGCGAGCAT TGGTAATATA AGTGTTTCCT
  R
  TTTAAATCAT CATACTGCAT ATACTGAAGG GCTCTGTTGG CTAAATAATA AATATATCAG
  ACAGCATATA TCTGAAGAAA TCGCTATCTG AGGGTTTTTT TTTAGGAGAA TAAGAGATAA
  TTTATCAGTT TATTCTGAAG CCAGAGGTGA GTTGCCATCG CCCAGAACCA CTCGTTCCAA
  ACATGGTGAC CATTCTATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38132710	NES09275853	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27977878					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132710	NES09275853	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68905769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558372	regulatory region 558372			1727 bp proximal
Tssr18090	transcription start site region 18090			97 bp upstream