rs27977875 SNP Detail

Summary

• ID
  rs27977875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68907587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT AATGAGCCAA GAACTCCGGA
  Y
  GCATTAATGT GCCCTATCCT CCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38132707	NES09275806	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	C		C	T	C	C		C	C		T
ss45277586	mCV25079777	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss146726789	ENSMUSSNP3687315	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							T
ss320329972	CHEV_2_68915300	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27977875					SNP	C	C	C	C	T	T	C	T	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132707	NES09275806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68907587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558372	regulatory region 558372			within coordinates
Tssr18090	transcription start site region 18090			1707 bp downstream