rs27977874 SNP Detail

Summary

• ID
  rs27977874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68907803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCCTTT CTCAGAGCTG
  AGATACTGTC CAAGGAACTG GTGATCATTT CTATTCAGGG GATATCTAGG CCACATTCCA
  GCCCCACCCC ACACAGGTCA GGAGAAGAGT TCTCTCCACA TGGTGCCTTC CTGATGACAT
  CATTGTCTGG TGTTGTTTCA CTGTAGACAG CCCCTTGTCT TGCTGTTCCC AGAATATGAC
  R
  CACTCCCAAA AGTGAAACTT TTATATCCAC TATGGCCCTG CCCACTGGCC AGTCTGCTTT
  GGAAGGGAAG TGGGGGGGGG GGTGTATTAA AGTGACACCA CTCCTCTTCA CTGTCTCCAC
  AGCACACACA GTCCCACTCC AGCAGCCCAT GGAGGGACTT TTATTTTTTC CAATCTGCAG
  AATGGAGAGA TGAGAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38132706	NES09275807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27977874					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132706	NES09275807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68907803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558372	regulatory region 558372			within coordinates
Tssr18090	transcription start site region 18090			1923 bp downstream