rs27976846 SNP Detail

Summary

• ID
  rs27976846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70607405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATAATC TTTATTCCAA
  TACGAGTGGC TGTGCTGAGT CATGTAACCA AGCAAGCTGT GTAAGCAAAC ATAATGGGTC
  ATTCTCTATG TACTGGGAGG GCAACTTTTG AGCTCTGCTA TTCATTTCAA TGGCTCGTCA
  CCACTATATT GACTATAATA GAGAGTTGAC CTGCCTATCC TCTCAGGTGC TTGGATTACA
  R
  ACATAAACCA CAGCACCTGG CTTTAGGTAT TCCTATTTAA GGTCAATTAT TTGAATGTCA
  AGTCTTAGTA CAGATTCCTT GGATAGTAAA ACTAGCAATT TCAAAAAAAA AAAAAAGATA
  AAAAAAAACA GAAACTATCA ATGTCTTCAC AAATATTCTT AACTTTACCT TCTATGTCAG
  AATTAATATA TATATATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38125875	NES09285685	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27976846					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125875	NES09285685	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70607405 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558601	regulatory region 558601			1510 bp proximal
Tlk1	tousled-like kinase 1			Intron
				Noncoding-Transcript-Variant