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rs27976845 SNP Detail
Summary
  • ID
    rs27976845
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:70607755 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAATATTCT TAACTTTACC
    TTCTATGTCA GAATTAATAT ATATATATTT TTTCCATATG TTAACAGTAC CCTGTGCCAT
    GAAATGGTTT ACTTAATACT TTTGGTCTTT GGTTTTAAAA ATAAGATTGC AGCTAGGTCT
    TTAAAACATT TTATTAAATA ACCATACTGT AACTAAATAG AGGTAATCTA TAAGCTCTCT
    M
    TATACAGAAT ATTTTGAAAT AGTATGATAG TTTAAGTACA TTATTGTTCC ATAATTGATC
    TTAATAAAAA TACACTTGGG TATATTGTAA AAAAAATTGC TTTTCCTAAC CCCAATATAA
    CACCTTTCTA TAAGAGGCTT TTTAAAAATT ACTTATTGTA CTGGCTGATT TTGTGTGTCA
    ACTTGACACA AGCTGGAGTT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38125874 NES09285688 PERLEGEN MM_PANEL2 f SNP A A A C A A C A A C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27976845 SNP A A A C A A C A A C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38125874 NES09285688 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:70607755 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr558601 regulatory region 558601 1160 bp proximal
Tlk1 tousled-like kinase 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory