rs27976844 SNP Detail

Summary

• ID
  rs27976844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70609478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTATTT CTGCTATTTT
  GGAATAGCCA TTCTGATGAG GGTAAGATAA TATCCCATCA CAGTTCTGAT TTGCATTTCC
  ATGACAGCTA CTGATGTGTA ATTCTGTAAA GCTTTCACTG ATAATCTCTG AGGAATCATA
  ACTAGCAGGT ACAATTTTTT AAGCCGAAAC TACTAAAACT AAATTTTAAG AATTTGCTTC
  Y
  TCATTTAAAT GCCTCCACAT TTTATGTCTT CTTGGATAGA AAGAGAGATC AAGGGGCTGG
  AGAGATGGCT CAGCGGTTAA GAGCACTGAC TGCTCTTCTG AAGGTCCTGA GTTCAATTCC
  CAGCAACCAC ATGGTGGCTC ACAACCATCC GTAGCAAGAT CTGGCACCCT CTTCTGGAGT
  GTCTGAAGGC AGCTACAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38125873	NES09285649	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27976844					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125873	NES09285649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70609478 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558601	regulatory region 558601			542 bp distal
Rr558602	regulatory region 558602			557 bp proximal
Tlk1	tousled-like kinase 1			Intron
				Noncoding-Transcript-Variant