rs27975763 SNP Detail

Summary

• ID
  rs27975763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78437303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACCTG TGTATTCTTG
  ATTTAATTTG CTAATGTCAC AGGTTAAGGT ATAATTTTAC TTGCATGAGT AAATTGCCTG
  TGGATTATAT TTTGTGTTGG ACAGATAGGA ATTGTTCTAC AGCACAAATC TGGATACAGA
  ATCAGTCTGA CTCAGCACTC AAGATGGAGC CAACCATTGT TTTAGAGTTT TTATAGGACA
  R
  GCAGATTCTG AAGTCGCTGT TTTACACACC ATGGTGTGAC CTAAAGTAGA GCATTGCCTG
  GTCTCCACAA ACCTCCCTTT TGGCCACTTG CTCCTCCTCA GTTTCCTTTC AGGCTTTTCT
  GTGCTATGCC GAATGTTCTA TAGTCCTTAA ATCTATTTGC AATACTGTCA ATAATATGAC
  CATCTCAGCT ATTCCTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38096288	NES09264699	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27975763					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38096288	NES09264699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78437303 () rs orientation: forward

Symbol	Name	Function Class
Rr559876	regulatory region 559876	231 bp distal