rs27973978 SNP Detail

Summary

• ID
  rs27973978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69300772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTCATTA AATGATGGAA GAAGGCCCAG GAGCTAAGGA
  CTGAGGGTCA TGAGGTATTA AGGCACCCAA GATGAATCTA GTCAGTTCTA CAGCTGTGTA
  S
  TGACCATGCC TGCTAACTAG AGCTGCCATC CACAAGCTAG GGTACTGCCA ATATGATTTC
  AACCTAAGGC ATAAGCATAG ATTTATGAAG AAATCCTTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38130700	NES09291637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27973978					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130700	NES09291637	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69300772 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	1451 bp proximal
Rr558419	regulatory region 558419	1622 bp proximal