rs27973973 SNP Detail

Summary

• ID
  rs27973973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69301421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAAGAAAA TGCCAGGACA GCAGAAAAAG AAGGGAGAAA
  AAGAGAAAAA TGACCAGAGT CAGTAAGAAC CTGAAAGTAC AGGGTGTGGG AGCAGAGAGA
  Y
  GGTAGAAAGG AAGGGGAACA GGAGTCAGGT AGAAGGGACC ATAGAGAGGG AGGCAGAGAC
  AACCCAATCT AATCAAAACA AAGCCCTGGG TTTTCAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38130695	NES09291645	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	T		C	T	C	C		C	C		C
ss45364050	mCV25166399	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss320331034	CHEV_2_69309134	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27973973					SNP	C	C	C	C	T	T	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130695	NES09291645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69301421 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	802 bp proximal
Rr558419	regulatory region 558419	973 bp proximal