rs27973970 SNP Detail

Summary

• ID
  rs27973970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69301484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGAGAA ATTCAGAAAG
  AAAAAAGAAA TATGAGGAGT AAGAAAATGC CAGGACAGCA GAAAAAGAAG GGAGAAAAAG
  AGAAAAATGA CCAGAGTCAG TAAGAACCTG AAAGTACAGG GTGTGGGAGC AGAGAGACGG
  TAGAAAGGAA GGGGAACAGG AGTCAGGTAG AAGGGACCAT AGAGAGGGAG GCAGAGACAA
  M
  CCAATCTAAT CAAAACAAAG CCCTGGGTTT TCAGATATTC ACATCTAACA GCAATGGAAT
  TGACTACTTA CTGAAACTAG AACAGAACTC TTAACCAGAC AGGCAGATGA CTCACTTTGA
  CTGCCCAAAT AACAACTGTA AATACACTTT CTGGGATACA TCTGTCCTTA CTCACTGCCA
  TTCACTGCAC TACATGCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38130692	NES09291648	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27973970					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130692	NES09291648	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69301484 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	739 bp proximal
Rr558419	regulatory region 558419	910 bp proximal