rs27971819 SNP Detail

Summary

• ID
  rs27971819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70915515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATAGCT GAGCCAGGTG
  GCACAGGCCT GAAATCTCAG CTGTGCAAAA GGCCAAGGCA GGAAAATTCT AATTTCAAGG
  CCAGCCTAGG CAACTTTGTG AGACCTCTTA CTAAATAAAA TAAAAAGAGC TGGAAATGTA
  GTTCAGAAGA ACAGTACTTG CCTAGAGTGT GTGAGGTCCC AGGTTCAGTC TCCGGGCCCT
  Y
  CAGGCAGGAT GATGATCTGT GTTTGTTCTG ACTGATGGGC TAGCGTTTGT TTGCTGTTGG
  CTGTTGACCT TCTGCTTAAA ATGCTCTTCA TTTGGCTTGA AATAGTCTTG ATGTCAAAAT
  AGTCTCAAAT TTTTATCTTT TACCCATACT TCCTCTAACT GCAGCTTATC CTCAGTATTT
  AGGTCTTTTC TTCTCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38124949	NES09277668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971819					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38124949	NES09277668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70915515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				Noncoding-Transcript-Variant
Rr558667	regulatory region 558667			837 bp distal
Tssr18238	transcription start site region 18238			991 bp downstream