rs27971696 SNP Detail

Summary

• ID
  rs27971696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGTTAGC TTAGAACATC
  ATGTAGTTAA AGATTCCTTA TGACTATTAA TACAAAATCC CCCCCAAGCA GAAGGTTAAA
  AGTTACCATT GTTTCACTTC CTTCTGAACC CTGCAAAATC TGAGCACAAC ACGGTTGTGT
  TTGAATGGGA AACAGAAGCA CAGAGAAGCT CATCACTGCC CCATGAGGCC CACAGCAAAT
  Y
  GGAGAAACCC ATGCTCAGAA TGAGTGGAGC CTGAGACAAG AGAAGCCTGG GAGAGAAGAG
  TCCAAGGCTG TGATCTGGGA GGGCCCCTCT CCCCTACCAC GCCCCCCTTC CCCCTCCCTT
  AGCTTCCATG AGCCTCCACA TCACTGATTC TTGTTTGAAG GAGGCCTCTG TGCCTTTGAG
  ATTTAAGATA CCCATCGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38124825	NES09276612	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss146739047	ENSMUSSNP1865708	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971696					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38124825	NES09276612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935280 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1291 bp downstream
Rr558671	regulatory region 558671	1316 bp distal
Rr558672	regulatory region 558672	459 bp distal
Rr558673	regulatory region 558673	within coordinates