rs27971493 SNP Detail

Summary

• ID
  rs27971493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73636508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAAAATA AGACCTTATG
  TACTAACACA GAGCTTCCTT TCCTCCTATG TTCATCCTGG GCTTGAACCT GACCCCGGCT
  TATGTCCTGG CCCGTTTTCT GTGAAATAGC AGGATACACA AGGCTGAGTG ATTGATAAAG
  GACATGATTG TGGAGGCTGG GAAGTTCAAA ACTGGTGCCT GCCTCAGATG AGGATCCTCC
  R
  TTGCTTCCTC TCTTGGTGGA CAGTGAGAGG CCAGGGGGCT TGGCAGGAAA GGTCAATCAC
  AAAGGGAGGG CTGGCTCATT TAAATGGACC TTTTCCCTGA CAACTCCCAG AAATCCAGTA
  ATCAGTTGAT TTTTCCAGCC ACCACAAGAA ATATTTTTAA GCCGTTCACT ACTCAGAGCC
  TCTGTATTCA AATATCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115915	NES09284448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971493					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115915	NES09284448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73636508 () rs orientation: forward

Symbol	Name	Function Class
Rr559238	regulatory region 559238	1674 bp proximal