rs27971485 SNP Detail

Summary

• ID
  rs27971485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73638503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGAGGCA TAACTGGAAC
  ATGGGTGGCA CAGAGCTGGG TCCCTGCATC ATAACACCCA GACTACAGCC ATCTTTATTG
  ACTCCTGGTT TACTTCTCTA CCAAACGAGG TTCCCATTCT GCCCTCTTAT GTTGTTCAAT
  TCCCTAGCTC CCCAGTGCCC ACCATCTCTG AGCGGAGCCC CTGTGACAGT CCAACCTGCG
  Y
  CCCTTCTGGA ATTCCATGAG ATTAAACTAT TTCATTTTGT GATGCTTGGG GGCAGGGGGA
  ACAAAACCAG AATCAACCGT ATCACAAAAT CAGCCAGTGT CCTTTATGTG TCCATGCGAT
  TCAGCATATC CAGCCATCTT TATTTTAAAA ATAACCAATC TTCGGACTGG CGAGATGGCT
  CAGTGGGTAA GAGCACTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115906	NES09284382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971485					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115906	NES09284382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73638503 () rs orientation: forward

Symbol	Name	Function Class
Gm13640	predicted gene 13640	1003 bp upstream
Rr559238	regulatory region 559238	300 bp distal
Tssr24587	transcription start site region 24587	821 bp downstream