rs27971289 SNP Detail

Summary

• ID
  rs27971289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73754448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGATG TGGGAGAATT
  GGGAACTAAC CTTGGGCCCT CTGAAAGAGT AGTGAGCGCT CTTAAGCACT GAGCCATCTC
  TCCAGCCCTG CCACATGCAA TGTTATTTAT AATTTCAAGA ACTGAGTCAG GAGTGATTAT
  TCCTACAAGG CAACAGCAGG TGATAAATGC TGAAGTTGGG TTTTGGGTGA TTTTCTGTGT
  K
  TAAAAGAAGC CCAGACAAGG TGCAGTGTAA GGGGCAGTCA CAGATCCACA AGAAGACCCA
  TAGAGTCAAC TAACTGGGGA GCACGGGGAC TCACAGAGCC TCGGCCACCA ACCAGGGAGC
  ATGCAGGAGC TGGACCTAGA CCTCTTACAC ATTTGTAGCA AATATGCTGT CTCTGTCTCT
  GTTCCCTGCC ATTGGGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115709	NES09281252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971289					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115709	NES09281252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73754448 () rs orientation: forward

Symbol	Name	Function Class
Rr559257	regulatory region 559257	1023 bp proximal
Rr559258	regulatory region 559258	1136 bp proximal
Rr559259	regulatory region 559259	1838 bp proximal