rs27971195 SNP Detail

Summary

• ID
  rs27971195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72502923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCTG TAATGGGATC
  CAATGCCCTC TTCTTGTGTG TCTGAAGACA GCTTCAGTGA ACTCATAAAT GAAAAAATAA
  ATAAATCTTT TTTAAAAAGA CACTATTGAG TTGGATAAGT ATTGGCATAA CAGTTTCCGT
  CCTATGTAAA TGGTTTTCTA TTTGGAGGAC TGTGAAAACA GATTGCTCTC TCTCCAAGGG
  R
  AAAATACAAG CACAGAATAC ATTGCTCTGT GTTAAGGGGG TGGTGTCAAG TGTTCAAACT
  TTAGGTTCTA AACTGGGCAC TGCTAGTTAT TAACCATAGA CCTTGGACAG TGTCCTCATC
  TGAAGAGAGG AGAAAAGAGC CAGTCTGACC TCACAGGGAG CTTGTGAGTT TGAAATGAAT
  TGATATGTGT ACCCAAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118922	NES09279744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971195					SNP	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118922	NES09279744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72502923 () rs orientation: forward

Symbol	Name	Function Class
Gm75261	predicted gene, 75261	99 bp downstream
Rr559011	regulatory region 559011	408 bp proximal
Rr559012	regulatory region 559012	1514 bp proximal