rs27971192 SNP Detail

Summary

• ID
  rs27971192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72503915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCCTTGA ACCTTTTTGC ATCCTGCAAC ATCTGACATG
  CTTTGTGAGA GGCGGCCACC TGCAGGAGTT CGAAAATAGA TGCTTCCAGC CAACAGAGAA
  Y
  GCTCAGAAGT GATGTGTTAA TATCATTCTC GTAACTACTT GACCTCTGAC CTAAGTAGCA
  GTAGCAAGCT GACCCAAGCC ACAGTAAAAG AATTGGAGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118919	NES09279713	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971192					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118919	NES09279713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72503915 () rs orientation: forward

Symbol	Name	Function Class
Gm54161	predicted gene, 54161	1375 bp upstream
Gm75261	predicted gene, 75261	1091 bp downstream
Rr559011	regulatory region 559011	within coordinates
Rr559012	regulatory region 559012	522 bp proximal