rs27971191 SNP Detail

Summary

• ID
  rs27971191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72504951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAAGCC AATCCAGCTG
  TGGGGAAGGC AGCTGTGTGA TATTCTGCCT CCCACTTAGT CAGCCAAATT GTCTGCTCAC
  CGCCCCCGCC CCCATTCTCC TCCCCCAGTT GTTGCGGCTG CAGGGATAGA AGCACACCAT
  GGCTGGAGAC AGTTTCTGCC AGTTAACCCT GTGTTTCTCT GGCTCTCTCT CTTCTAGGCT
  Y
  CCCTTATCAT GCTTCCTCGC CCTGTACCTC CCCGGAGTCT TCTTTTTTTT TCCCCTTTTT
  ATAGAAAGAT CGTGTGCACG AGATAATTCT GATTGCTGGT AATTTCTTTA AAATCTAGTC
  ATAAGCACAA TTCCACAGTT CACGGCAGCC TTCTCTTCCC ATACCTCTCC TCCTCCTTTT
  CATTCTTTGT TGATGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118918	NES09289274	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971191					SNP	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118918	NES09289274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72504951 () rs orientation: forward

Symbol	Name	Function Class
Gm54161	predicted gene, 54161	339 bp upstream
Rr559011	regulatory region 559011	658 bp distal
Rr559012	regulatory region 559012	within coordinates