rs27971190 SNP Detail

Summary

• ID
  rs27971190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72505342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGCTAC ATAGTATCAC
  TACCTGGACT GACCCTGCCT TCATTTAACC ATTTTTGGAC TTAGCCGTAA GCAATGGTAC
  AATGAATCTC TCTGCACACA TCCCTACCTT CCTTTTTGAC TATTTTCATC AGGAAGACTG
  TGAGTGGCAT TGCTGACGAA AAGGCCATCT ACTTTCTTAG GCATCTCATG AGTTGTTCCA
  R
  ATAGCTTTCC TTTTAAGATC TATGAGCGTA TGGTAGTCTA AGCCATTTTT AGTGGCTGAG
  CCACATGAGA GAGAAATGTG TTTCCTTTTC CCTCAGAGAT AATGTGGAAA CCATTGTACA
  TCCCCAAGTC CTGTGTCCCA GCTGTGTCTG CTACAGTTTT GGAGACACGG TGTCCCTGTC
  TAAGGACTCT AAGGACGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118917	NES09289275	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27971190					SNP	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118917	NES09289275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72505342 () rs orientation: forward

Symbol	Name	Function Class
Gm54161	predicted gene, 54161	within coordinates
Rr559011	regulatory region 559011	1049 bp distal
Rr559012	regulatory region 559012	348 bp distal