rs27969772 SNP Detail

Summary

• ID
  rs27969772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74241149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACACTGT CCATGATGGT
  GGGAGCTCAT GATGGGGAAG GTTGCTCACT TCATGGAAGC CAGGGAGCCA AAGACCATTC
  CCCTAATATT TCCCTCAAGA ACATGAATCA CCTGCAGCTA AATTCCATCC CTTAAAACTC
  CACCCTCTTC CCAGAGCACC ACCTGACGGC CAAGCTTTTA CCACGTGAGA CATTCTCAAC
  Y
  CAAACTGTAC AGGATCACAT TCATCAATGA AAATAACAAA AGTGTAAAGT TGCAATGGGA
  CAAGAGCGTC AAAGGGGGCA TCCGGAATAC TTAGAAGAAT GTCTGAAAAG AAGGAGTCCA
  CCTACCTTGA AAAATCGGGA ACAAGACACC CACGGAGATG GCACAAGGGT CAGAGAGATA
  AGTCAGATGG TAATTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38113691	NES09262877	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27969772					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113691	NES09262877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74241149 () rs orientation: forward

Symbol	Name	Function Class
Rr559308	regulatory region 559308	530 bp distal