rs27969613 SNP Detail

Summary

• ID
  rs27969613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72925899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGAAA CACTGGTTGA
  AAAAAAATCA ATACCCATTT GTGAATCTTG AGTATGTATT AAACAAGACA CGTCTAACCA
  GTTCATTTGC ACTTGAAAGC AGCCATCTGT AGAAGGCAGC TTTGCCTAAG CAGATATGAT
  TGCTAATAGT GTGATATCCC TGTAGACTAC AAAGCCCAAA GCTATTCAGT ATATAGCTCA
  Y
  AGCACTGTAC TGAATTAGCT ATGCTGCACT GGTGGTAGAA ATAAACACAC ACACACACAC
  ACACACACAC ACACACACAC TCGCATGTAC ACATGGTCCT GTTTGCAACC TCAAACCTCC
  TTATCATGTA CAAGTAAACA CTGCTGGATA AGGAGTATAA AGCAGTTCAT AAATTCTTCA
  TTTATCCAGA GCTCAAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38117848	NES09277697	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		C
ss320344370	CHEV_2_72933612	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27969613					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117848	NES09277697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72925899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			within coordinates
Rr559098	regulatory region 559098			1106 bp proximal