rs27967849 SNP Detail

Summary

• ID
  rs27967849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74548846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCGCTT GGTTGAAATT
  CTCCTCTCTT ATGAAGAATC TCATGAACAC CACTTCAGGT TGTAACCTCA CACACACACA
  CACACACACA CACACACACA CACCACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC CACACACACA CACACACACA CACACACACA CACACATACA CATGTGTACA
  Y
  TTCCTGAGAC CAGGTTCCCA CCTCTTCAGC TCTGGCTCCC ACCACCATTT TCCAGGCTAC
  ATCTCTTGAC TACACCTGAG TACAATCTGA GTCTGGGTCA GATTATCCTG AAAACATAGA
  GAGTTTCTTC TCCCTCCAGT TTGTGCTTTG TGAAGTTTTG CCTATAGCCT AAGGGAGCAA
  CCCAACAGGC CATCCACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112871	NES09259357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967849					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112871	NES09259357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74548846 () rs orientation: forward

Symbol	Name	Function Class
Hoxd3	homeobox D3	Intron
Igs15	intergenic site 15	within coordinates
Rr559376	regulatory region 559376	1906 bp distal
Rr559377	regulatory region 559377	1503 bp proximal
Tssr18437	transcription start site region 18437	1507 bp downstream