rs27963569 SNP Detail

Summary

• ID
  rs27963569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75846735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGACTCAG TGTGGGAGCC TCATGCAGAA CCGTAGCAGC
  ACGTGGAGTG CGGGGTTCAC TTCCAGTGAG AGAAATTTAT TAAGTAAAAG ATTAACTTCT
  Y
  CAGCCCACTA ACGCCTATGC ACTGGGACCG GAGAACCATC AAACCATAAC CTCATGTGGG
  CAACCAAAGA CAACTCAGCA AAGCAGAAGG TCCTTGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss38107792	NES09259402	PERLEGEN	MM_PANEL2	f	SNP		C		C	T	C	C	C
ss45209364	mCV23799669	ABI	CRAMUS_MOUSE	f	SNP	T		C		T
ss146769906	ENSMUSSNP7072932	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27963569					SNP	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107792	NES09259402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75846735 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	504 bp proximal