rs27963568 SNP Detail

Summary

• ID
  rs27963568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75847370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAAAAGT ACTGAAAATG
  AAGTGGCGGG TAAGTTTGAG ACTTAATGGC TTTGAGGTCC TTAAAAAACA ATCCTGTGTT
  CTTAATGGAG TGGCAGATAG TGAGGCACTA AAGAGGCTTT GCCTATTGAG TGCATCTCTT
  TTTGAAGTTA GGCTCAGACT GATTGAGCTA GGTCGGGGGT AAAGAACTCA CTGGGGTTTC
  Y
  AGATGAAAGC AAACGCTTAG CAGCAGAATT AAAAGCCAAT GCACACCAAA CTCTTAGTGC
  AAACGGATGC CAGCCCCGAT CCAAACTCAA AAAGCAGAAT GTGAACCATT TCAAGCTGAC
  ACATTGTGTC CTTGCCCCGG GGCGGGTTCT GCACCAGGCA GTGAAGCAAC AACTCATTAG
  TGGTCTCACT CCGTATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38107791	NES09259403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27963568					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107791	NES09259403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75847370 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	within coordinates