rs27963562 SNP Detail

Summary

• ID
  rs27963562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGCCATT TTCTAAGCAC TAGCTCTTGG GTCAGAAATT
  AGAAGCAACT TTACAGTTTG TAGCCTGAGA ATATCTCCAA AATCACGTTT CTGAACAGAC
  Y
  TTACCCAGGC TCTCCTCTAC CTCAGGCAGG ACAGACAGAC ACTCACAAGT CAGCAGTACC
  TGATACAAAG GCATGCAGAT GCTATCAATC CACTCCAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38107785	NES09259344	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	C		T	T
ss45319137	mCV23799691	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss146769918	ENSMUSSNP3628346	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320352415	CHEV_2_75855833	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27963562					SNP	C	C	C	T	C	C	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107785	NES09259344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848120 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	364 bp distal