rs27963561 SNP Detail

Summary

• ID
  rs27963561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGGGTC AGAAATTAGA
  AGCAACTTTA CAGTTTGTAG CCTGAGAATA TCTCCAAAAT CACGTTTCTG AACAGACTTT
  ACCCAGGCTC TCCTCTACCT CAGGCAGGAC AGACAGACAC TCACAAGTCA GCAGTACCTG
  ATACAAAGGC ATGCAGATGC TATCAATCCA CTCCAGCTGC AACCGAGGCA GTTCATCTTT
  Y
  CGGTTCCGGT CAAAAATAGC CTAGAGCAAG GAAGCAGAAA CCTGGCTTTT ATTCACTGGA
  GTATTTTACC GTCACTTCGT CAGACAACAG TTCAGATTTT ACCAATGGGA TATTTCACAA
  ATCCCGGTCC TCACTCGTAG CTTCTTTTCC TGTATCTACG ATAAGAAATA AAGTTAATCT
  GCACATCTTC TTATGAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38107784	NES09259345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27963561					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107784	NES09259345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848243 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Coding-Synonymous
Rr559634	regulatory region 559634	487 bp distal