rs27963560 SNP Detail

Summary

• ID
  rs27963560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGTCAAAA ATAGCCTAGA GCAAGGAAGC AGAAACCTGG
  CTTTTATTCA CTGGAGTATT TTACCGTCAC TTCGTCAGAC AACAGTTCAG ATTTTACCAA
  Y
  GGGATATTTC ACAAATCCCG GTCCTCACTC GTAGCTTCTT TTCCTGTATC TACGATAAGA
  AATAAAGTTA ATCTGCACAT CTTCTTATGA GGTTTGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38107783	NES09259346	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	T	C		C	C
ss45229161	mCV23799693	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss146769923	ENSMUSSNP5662291	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320352417	CHEV_2_75856062	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27963560					SNP	C	C	C	T	C	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107783	NES09259346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848349 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	593 bp distal