rs27963558 SNP Detail

Summary

• ID
  rs27963558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCGTCA GACAACAGTT
  CAGATTTTAC CAATGGGATA TTTCACAAAT CCCGGTCCTC ACTCGTAGCT TCTTTTCCTG
  TATCTACGAT AAGAAATAAA GTTAATCTGC ACATCTTCTT ATGAGGTTTG TAAGTGGATT
  TATTTAAACT TTATGGCTTG CAACACCTGA GGGCCAAAAT CTGTCTGCAG GTACAGGTAA
  Y
  TGTTACTAAA TCAAGTCACC AGGTCACTGG GAACTGGGTA CAAGTCAAGG GGAAGGGAGA
  CACATTTTAT TGCCACAAAA ATAATGTGGG CTTTCCTTTC TGTAGAAAGA AGAAGTCAGA
  TTGGAAAAAC TCCTTCACAG TGATCCTCTC TCTCTTTCTT GCCTTCCTTT TTATTAAACA
  TAGATTCTTT TCCATTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss38107781	NES09259348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs27963558					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107781	NES09259348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848516 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	77 bp downstream
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	760 bp distal