rs27963557 SNP Detail

Summary

• ID
  rs27963557
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGGTGC TATCGGCAAT
  CATGTGTTTT CCCGTAAGGT TCTGTAATTA GTAGGTGACT AAGTGTTTGT CCTTGGATGG
  GTGGTGGCAG CAGGCATCCA TCCTTTCTTC ATATCAGCCT TTAAATTTTA TGACATTATA
  ATGCTTGATA TAATTTATAT GCATTTCTAA AAGCCACAGT GATTTATTTC TAGTGGGGAG
  W
  CTTCAATCAA CTGGGATTAG AGGGTTAAAA TCTCTTTCTT AAGAAACAGC CACCTCAATT
  CCAGTGAGAA TGTCTTTCTC TTTGTTCTTA AGGAGTGAAG CCAGAGCCTG TGATATTACC
  TTGTGTCACT TGATCTGGAA GAGGGGCGCT GCCTAGTTGT AACGTGTCTT ATTGAAAAGC
  TAGGTGAGAG ATGACACTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38107779	NES09259350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T		A	A
ss320352422	CHEV_2_75856641	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27963557					SNP	T	T	T	T	T	A	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107779	NES09259350	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848928 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	489 bp downstream
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1172 bp distal