GGAGAGCTGG AACCAGCGAA ATTCTTCCGT GCCTTGACAT CGAAGACACG AAACCCTCTT CCCAACCAGA TCATGTCAGA CTCGGGGAGA ACACACTTCC GTATAATGAA TAATGCAGCA GGAGACAGTT CTCAACCTAA ATAGTTCCCA TTTCCCAACG GCCTGTAATG AAATCCATCT TTGTCTCTTG CTCCTGAAAT R GTGCGTATTG TTCCCAAATA ATCACCGTTC GTTTCTCAAG ATACTGTTGC TTTAGATTGT TTGTTTGCTC CTGTGAACAA ACACCTCGGA GTGATTCTCA TTAAGATCAC AATGAACTAA GAGGCATAGG AGCTGCCTTA CTTGGCTATG GTGGATTGAT TTCATTTTAA ATGCAGGATG GGGAAATGTC TTCCATTAAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38125677 | NES09283203 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | G | G | A | A | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs27961354 | SNP | A | A | A | A | A | A | G | A | A | G | G | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38125677 | NES09283203 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:70689395 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm13633 | predicted gene 13633 | 1401 bp downstream | ||||||
Gm75544 | predicted gene, 75544 | within coordinates | ||||||
Rr558618 | regulatory region 558618 | 878 bp proximal | ||||||
Rr558619 | regulatory region 558619 | 1101 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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