rs27961349 SNP Detail

Summary

• ID
  rs27961349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70691184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTATCATA GTAGACACTT
  CTATCAGAAC CACTTGGGAA TTAGCTAGAG CATTCAGGGA TGAGAGGCAC CAGACAACAT
  TTCTCTTGGA TAAGCAACTG GTATTTGGTG TGTTTATTTC TTCATCTTAT AGGATACTGG
  TGAGCAGATA ACTTTTCAAA ACGTTTTGGT ATTTTAAAAG GAACTAGTCT GAGTGGGAGA
  R
  TTAAGTTAAC CCACAATGAC TAGTAACTGC CGAGTAGCTG CACAGCTTGG ACATTGCTTG
  CAGTGGTAGT CAATGACCAA CAGGCTCCCT TCTCTGAGAA CATGGGGACT GCTAGGGTAA
  CAGGGAAGTG GACAAAAGGT TGGTTGGCTT TTAATCAGAA ACAATACTGT TTAAGACTAA
  AGTCCCCTTT AAACGTATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38125672	NES09283133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27961349					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125672	NES09283133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70691184 () rs orientation: forward

Symbol	Name	Function Class
Gm75544	predicted gene, 75544	within coordinates
Rr558618	regulatory region 558618	890 bp distal
Rr558619	regulatory region 558619	667 bp distal