rs27961346 SNP Detail

Summary

• ID
  rs27961346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70691325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGATAA CTTTTCAAAA
  CGTTTTGGTA TTTTAAAAGG AACTAGTCTG AGTGGGAGAG TTAAGTTAAC CCACAATGAC
  TAGTAACTGC CGAGTAGCTG CACAGCTTGG ACATTGCTTG CAGTGGTAGT CAATGACCAA
  CAGGCTCCCT TCTCTGAGAA CATGGGGACT GCTAGGGTAA CAGGGAAGTG GACAAAAGGT
  Y
  GGTTGGCTTT TAATCAGAAA CAATACTGTT TAAGACTAAA GTCCCCTTTA AACGTATACG
  TAAGCATACT GATGTTTTGG AGGCTGTGCA AATCATTATT GATGGGTTTA GGAGGCTACA
  GTGATAGCTC AGTAGGTTAA ATAATTCCAA CACTCGGGGG AGCTGACACA GGAGGATTCC
  TGGAGCTTGG TGGCCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38125669	NES09283138	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27961346					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125669	NES09283138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70691325 () rs orientation: forward

Symbol	Name	Function Class
Gm75544	predicted gene, 75544	within coordinates
Rr558618	regulatory region 558618	1031 bp distal
Rr558619	regulatory region 558619	808 bp distal