rs27961343 SNP Detail

Summary

• ID
  rs27961343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70691436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCTTGC AGTGGTAGTC
  AATGACCAAC AGGCTCCCTT CTCTGAGAAC ATGGGGACTG CTAGGGTAAC AGGGAAGTGG
  ACAAAAGGTT GGTTGGCTTT TAATCAGAAA CAATACTGTT TAAGACTAAA GTCCCCTTTA
  AACGTATACG TAAGCATACT GATGTTTTGG AGGCTGTGCA AATCATTATT GATGGGTTTA
  R
  GAGGCTACAG TGATAGCTCA GTAGGTTAAA TAATTCCAAC ACTCGGGGGA GCTGACACAG
  GAGGATTCCT GGAGCTTGGT GGCCAGCCAG CCTAGCAGAA TCCACTAGTC CCAGGTTTAA
  TGACACACGT TTCAAAGAAT AAAGTGGAAG GCCAGCCTGG TCTACAAAGA GTTCCAGGTC
  TGCCAAGGCT ACCCAGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38125666	NES09283145	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27961343					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125666	NES09283145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70691436 () rs orientation: forward

Symbol	Name	Function Class
Gm75544	predicted gene, 75544	within coordinates
Rr558618	regulatory region 558618	1142 bp distal
Rr558619	regulatory region 558619	919 bp distal