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rs27961343 SNP Detail
Summary
  • ID
    rs27961343
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:70691436 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTGCTTGC AGTGGTAGTC
    AATGACCAAC AGGCTCCCTT CTCTGAGAAC ATGGGGACTG CTAGGGTAAC AGGGAAGTGG
    ACAAAAGGTT GGTTGGCTTT TAATCAGAAA CAATACTGTT TAAGACTAAA GTCCCCTTTA
    AACGTATACG TAAGCATACT GATGTTTTGG AGGCTGTGCA AATCATTATT GATGGGTTTA
    R
    GAGGCTACAG TGATAGCTCA GTAGGTTAAA TAATTCCAAC ACTCGGGGGA GCTGACACAG
    GAGGATTCCT GGAGCTTGGT GGCCAGCCAG CCTAGCAGAA TCCACTAGTC CCAGGTTTAA
    TGACACACGT TTCAAAGAAT AAAGTGGAAG GCCAGCCTGG TCTACAAAGA GTTCCAGGTC
    TGCCAAGGCT ACCCAGTGAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss38125666 NES09283145 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs27961343 SNP G G G G G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38125666 NES09283145 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:70691436 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm75544 predicted gene, 75544 within coordinates
Rr558618 regulatory region 558618 1142 bp distal
Rr558619 regulatory region 558619 919 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory