rs27959345 SNP Detail

Summary

• ID
  rs27959345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78916219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTGTTG TGTTTTTAAA
  AATTGTAAGT CTCACAGAAT AGTCCTTACT TTCAATATGC AAGGATTTAG TGAGCCACTT
  CATGTAGGTC ACTCTAGTTG GAGGAGTTAG CTCTGTCCTG AGACCTGAGA GAAAGAAGTC
  TTGGCTTTAA CTCTTAGGTT CCTTCCCAGT AAGTTAGTAG AATACGACAA AGTCTCTTTT
  Y
  CTCCTGAAAC TTAAAGCACA CATATCTGCT GTATAGACAG CATCCTTTCA CTTCTGCAGA
  CTCAGGAAAT ACCCACTCAT TAGGCATTTT ACTAGATCCT AGTGATGCAT AGCTTGAATA
  ATTATTCAGT TTTTTTTTTG TTGTTGTTGT TGGTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TGAGACAGGG TTTCTCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38094861	NES09251335	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	C		T	T	T
ss146783738	ENSMUSSNP4444354	ENSEMBL	ENSEMBL_Sanger	f	SNP		T									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27959345					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094861	NES09251335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78916219 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	1247 bp proximal
Rr559927	regulatory region 559927	1281 bp proximal
Rr559928	regulatory region 559928	1552 bp proximal