rs27959343 SNP Detail

Summary

• ID
  rs27959343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78916565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGGTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTGAGA CAGGGTTTCT CTGCATCACC CAGGTTGTCC TGAAGCTCAC
  TCTGTAGACT AGGCTGGCCT CGAACTCAGA AATCTGCCTG CCTCTGCCTC ATGAGTGCTA
  GGATTAAAGG CATGCACCAC CATGCCTGGC TACAGCCCAG GATCTTATTC ATTAGTGTAG
  R
  CATGGTGCAG ACAACAAGCA AGCATAGTAA TCCAGGCACC AACACAAAGA TTGTCGTAAA
  TGCAGTTAGA GTCGACATGC CCAGAAATCA AAAAAGAAAG TGAATTTATT TTCCTCCTTT
  CATGGGTTTC CAAAAAGAAA TGATTTTAAT GTGGGTCAAA GACCAAGAAG AGAATGAACA
  GGTGTGGAAT TCTGAGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38094859	NES09251228	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G		A	A	G	A
ss146783754	ENSMUSSNP2817696	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959343					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094859	NES09251228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78916565 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	901 bp proximal
Rr559927	regulatory region 559927	935 bp proximal
Rr559928	regulatory region 559928	1206 bp proximal