rs27959342 SNP Detail

Summary

• ID
  rs27959342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78916721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCATGCC TGGCTACAGC
  CCAGGATCTT ATTCATTAGT GTAGACATGG TGCAGACAAC AAGCAAGCAT AGTAATCCAG
  GCACCAACAC AAAGATTGTC GTAAATGCAG TTAGAGTCGA CATGCCCAGA AATCAAAAAA
  GAAAGTGAAT TTATTTTCCT CCTTTCATGG GTTTCCAAAA AGAAATGATT TTAATGTGGG
  Y
  CAAAGACCAA GAAGAGAATG AACAGGTGTG GAATTCTGAG AGGGGCATAG GAAGGACCCT
  GTGTGACTGT TATAGAATGT GGGGGTGGAG CGAGCGAGAA GGAGAGCAGG TGTTCCTTTG
  CTGTCAGAAT GTCACAACCA TACCTCTGGA TTCTAAGTCA TGGTCATGCT TATCTACCCC
  AGCAAAGAAT GCACCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38094858	NES09251229	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T
ss146783759	ENSMUSSNP5111279	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27959342					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094858	NES09251229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78916721 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	745 bp proximal
Rr559927	regulatory region 559927	779 bp proximal
Rr559928	regulatory region 559928	1050 bp proximal