rs27959340 SNP Detail

Summary

• ID
  rs27959340
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78916877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTTTC ATGGGTTTCC
  AAAAAGAAAT GATTTTAATG TGGGTCAAAG ACCAAGAAGA GAATGAACAG GTGTGGAATT
  CTGAGAGGGG CATAGGAAGG ACCCTGTGTG ACTGTTATAG AATGTGGGGG TGGAGCGAGC
  GAGAAGGAGA GCAGGTGTTC CTTTGCTGTC AGAATGTCAC AACCATACCT CTGGATTCTA
  W
  GTCATGGTCA TGCTTATCTA CCCCAGCAAA GAATGCACCA CACTAGTCAG TTGTATTTCC
  TTATGAAAAC ATGGGCTGCG TGTATGCACA TGTGTGTTTT CTAAAGGCCT CCCAGTACTT
  AGTTTTATTA TAGGTTTATC CAGGCTTTCA AATGTGGTAA GAGTTTTCAT CTATCTTTAT
  TTTCAATGTC TTTTTGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38094856	NES09251231	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959340					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094856	NES09251231	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78916877 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	589 bp proximal
Rr559927	regulatory region 559927	623 bp proximal
Rr559928	regulatory region 559928	894 bp proximal