rs27959338 SNP Detail

Summary

• ID
  rs27959338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78917741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACTGAG AATAAGGAGT
  AACACTGGAT AATATTTAAA GAGAGTACGA ATGGAGAGAA GAAAAGACTT GGATTGTGGT
  GGAGGTCTTG AACACAAAGA GAAAGGGGAA AAGTAGAGAT GTCTTCTGGA AGCATGTGCA
  GTTGGCAAGG AGCTGAAAGG GGAAGGGCTG TTCATGGTGG GCTGAGGCTT CGGACTAACC
  R
  AAGCTGTTTC CAGAAATAGA AAGTGGAAGC ACCGAAGAAC GAGGACAAGA ATGTTCCGGG
  GAGAATATGA CGAGTTAATT AGCTACACAT AGGTAATGTA AGTAGGGATA ATTGAGTGCT
  TATAAAATTA GATGTGTGGG TCAGAGGAAA TTAAGCCTCC GCCAATGAAC TGACATCTGT
  GTTCATTTCT CTTTTGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38094854	NES09251233	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959338					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094854	NES09251233	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78917741 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	within coordinates
Rr559927	regulatory region 559927	220 bp distal
Rr559928	regulatory region 559928	30 bp proximal