rs27959334 SNP Detail

Summary

• ID
  rs27959334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78917902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCTGT TCATGGTGGG
  CTGAGGCTTC GGACTAACCG AAGCTGTTTC CAGAAATAGA AAGTGGAAGC ACCGAAGAAC
  GAGGACAAGA ATGTTCCGGG GAGAATATGA CGAGTTAATT AGCTACACAT AGGTAATGTA
  AGTAGGGATA ATTGAGTGCT TATAAAATTA GATGTGTGGG TCAGAGGAAA TTAAGCCTCC
  R
  CCAATGAACT GACATCTGTG TTCATTTCTC TTTTGGTGCT GACTGTTGTG GATTAGGACG
  AAAGGTGAAT TGCAATCACC GAGTTTGTTT AGATCAAGCA CAACATCATC CTTATCTGAA
  TACCTAACTC TCTCCCTGCT TAGCCTCTGT TCATATCAAT AGGCATTCTT ACTGCAATCT
  AACTCGCTGT CTCCATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss38094850	NES09251237	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G	G	G	G
ss45366301	mCV23806996	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss146783763	ENSMUSSNP41761	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27959334					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094850	NES09251237	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78917902 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	132 bp distal
Rr559927	regulatory region 559927	381 bp distal
Rr559928	regulatory region 559928	within coordinates