rs27959330 SNP Detail

Summary

• ID
  rs27959330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78918067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGATGT GTGGGTCAGA
  GGAAATTAAG CCTCCGCCAA TGAACTGACA TCTGTGTTCA TTTCTCTTTT GGTGCTGACT
  GTTGTGGATT AGGACGAAAG GTGAATTGCA ATCACCGAGT TTGTTTAGAT CAAGCACAAC
  ATCATCCTTA TCTGAATACC TAACTCTCTC CCTGCTTAGC CTCTGTTCAT ATCAATAGGC
  R
  TTCTTACTGC AATCTAACTC GCTGTCTCCA TGAAATCCCC AGCAAACAGA GAGTATCTGA
  CTCCCTTTTT ACTGCTGTAT GACAGCTGGA AAAGGTTACT GGTTCTGAAC CCAGATAGTT
  TCGGTCTCAT TCTCCCGCTG AACTCCCATA ATTAATCTTT TCCAGACTGA CAATAATTCC
  ACTGTCTCCA TTTCAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38094846	NES09251241	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959330					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094846	NES09251241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78918067 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	297 bp distal
Rr559927	regulatory region 559927	546 bp distal
Rr559928	regulatory region 559928	within coordinates