rs27959329 SNP Detail

Summary

• ID
  rs27959329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78918205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCATCCT TATCTGAATA
  CCTAACTCTC TCCCTGCTTA GCCTCTGTTC ATATCAATAG GCATTCTTAC TGCAATCTAA
  CTCGCTGTCT CCATGAAATC CCCAGCAAAC AGAGAGTATC TGACTCCCTT TTTACTGCTG
  TATGACAGCT GGAAAAGGTT ACTGGTTCTG AACCCAGATA GTTTCGGTCT CATTCTCCCG
  Y
  TGAACTCCCA TAATTAATCT TTTCCAGACT GACAATAATT CCACTGTCTC CATTTCAGAG
  AAACTCATGG TGTTTCTAAC ACTTCAGATA ACTCATTACT GGGTTAGAAA GGAATGGCGA
  TACTCCACCA GGCTTCTCCG GTTTCTCCGT GTGCTGTCAG GTCAATGCTC TCAGCACAGC
  TAAGCAGGGA CAGATGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38094845	NES09251242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959329					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38094845	NES09251242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78918205 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	435 bp distal
Rr559927	regulatory region 559927	684 bp distal
Rr559928	regulatory region 559928	within coordinates