rs27958367 SNP Detail

Summary

• ID
  rs27958367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69301870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTACAT GCTAAGACCC
  ACTCTCAATG TTTCAACTTT TATAGCACAT AACTGTTTTT TCCTCTTCAG GATACCATCA
  TACAAAAATC TTGGCCATCC TGCATTCCAG ACCTATCTCA ATATCTATCA ATGGGGCATC
  TGCCTCAGGC CTCTGCTGCT CTGACCTTTC AATCTCCTAC TCTAGCCGTG GAATCCTGAT
  R
  GTTCCTGGTG CCCGAAAGAG CCCCTGTGCT TTTTAACCCC CGAGTGGGTC CTGTACCTCT
  GTTTCAGGTC CACATAACCA AATGCCTAGT GCCTACATCT AAGGAATGTC TACAACATCG
  AGTACTTTCT CCCATCAGCA AACTTCTTTC CAGGTTGCTT TATTTTGATT GAGGCTTCTA
  TTAGTCCCTT TATTCCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38130689	NES09291651	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27958367					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130689	NES09291651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69301870 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	353 bp proximal
Rr558419	regulatory region 558419	524 bp proximal