rs27958364 SNP Detail

Summary

• ID
  rs27958364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69301996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATGGGG CATCTGCCTC
  AGGCCTCTGC TGCTCTGACC TTTCAATCTC CTACTCTAGC CGTGGAATCC TGATAGTTCC
  TGGTGCCCGA AAGAGCCCCT GTGCTTTTTA ACCCCCGAGT GGGTCCTGTA CCTCTGTTTC
  AGGTCCACAT AACCAAATGC CTAGTGCCTA CATCTAAGGA ATGTCTACAA CATCGAGTAC
  K
  TTCTCCCATC AGCAAACTTC TTTCCAGGTT GCTTTATTTT GATTGAGGCT TCTATTAGTC
  CCTTTATTCC TCTATAGCCA AAAATTTACT ACATACAGTG GTAAGAGGCT GGACACTACA
  AAAACAAAAT TCATTTTAAG AGACCCATTT GGAGAAAGCG GTGAGAAACC ACACCACAGG
  AAATCACAAG ATTCCCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38130686	NES09291654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27958364					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130686	NES09291654	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69301996 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	227 bp proximal
Rr558419	regulatory region 558419	398 bp proximal