rs27958359 SNP Detail

Summary

• ID
  rs27958359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69302797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATCATG TGACCATTGT
  GCCTAATGTG TGAGTCATCC CCGCCCCCGT GAATATTTGG GGTGTAGAGG GATGTGTTTG
  AATCCCAGTT CACCTGAATG ACTGCCTGAT ACACCGTCCA TTTGCACAGC TGAACTCTCC
  CGTAGAGCAC GCTCTCATGG TGCAGTTCTG CAGCTCGTCG AGGGCATCCG CGCAGTCTGC
  R
  TCGCCGTCAC AGACCCAGTG TTGTGGAATG CACCTCCTGT TTGGAGGTCT GCTGTTTATA
  CAGGTAAACT CAGTACTGGA ACAGTTCTGA AGCTCTGAAA CCAAGGCAGA CAAGAATCCC
  TCAGAGCCCG GAAATGCTCT CTTCACAATC TTATCATCTT TAACCCTCTC GCTAATCATA
  TGGGCAAGGT AGGACTATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38130681	NES09291548	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27958359					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130681	NES09291548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69302797 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Coding-Synonymous
Rr558418	regulatory region 558418	303 bp distal
Rr558419	regulatory region 558419	382 bp distal