rs27954840 SNP Detail

Summary

• ID
  rs27954840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73820370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTATTG AACATGTTTG
  AGAAGGCAAG TCAGGTATGG AGACAATGAG CAGAGCAAGC ATAGCCCTTT TAGTAAGCAG
  AGCCCCTGAT AACATAGCAA ACATGGCGTG CTTTGGGAGA GGGGTGAAGC TGCTGGTGGT
  GGAACCAGAG GAAGGAGGGA TGCGTCCCGC TTGCACTTCC TGTTTTGAGA TGCCAGGGAT
  Y
  GGTGATCATC ATAAAAGCTC CCTACCTGTC CTCAGCTTAT TGTAGGTTAA GGCATAATTT
  GGGCCTGGAG GGAGTTTTAA AAAGCCTATC ATTTCCTTTT CATTCCAATG TGGAAAAAGC
  CAAGATTAAA ATAAAGGTTT GAACTTATTT CGGATGAAGA GTGGATATTT ATGTTTTTCT
  TTTAGGTGAC CTTGGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115459	NES09279352	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27954840					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115459	NES09279352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73820370 () rs orientation: forward

Symbol	Name	Function Class
Rr559269	regulatory region 559269	1860 bp proximal