rs27954831 SNP Detail

Summary

• ID
  rs27954831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73821770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGAGA TTTGTCCCTG
  AGCTGTGGAG TCTGTCGCTG TACCCTGTGT ATGGTATCTG ACTCTATCAC AGCACCTTCA
  CTGCACTTTG TGATTGTGTG GAAAATAAAA ACTGGGGCTT TTGTTTTCCC ACTGACTCTT
  CCTCCAGGGG CTGTTGTCTC CTGGGCTCTG ATCTGTGGAT GCAGTAATGG GTATCATAGC
  R
  AGTGCCACAG TAGCAACGCC ACATACAGAG ACGAGGGATC AAGCTTACAG CTTGTGATGA
  TTATTTGCTA AAACATTAGT CTAGGTGCTT AATGTATTCA TTTATATTTT TATTTTCGAC
  ATCTGCATTT GGAGATTGGC TCCAAGGTTA AAGAAGAAGA TAACCCGTCT GGTAGGCCAC
  CCCCTGGTTT TTATTGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115450	NES09279361	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27954831					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115450	NES09279361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73821770 () rs orientation: forward

Symbol	Name	Function Class
Rr559269	regulatory region 559269	460 bp proximal