rs27954824 SNP Detail

Summary

• ID
  rs27954824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73822921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAGTCT CTTCAGGTCC
  CTTTAACTGG AGCGCACCCT CCTGGTCTCC TCTTCCTCTA TCTCCACTTG ACCTTGACCC
  CACAGATACC ATTGTTATTT AGGATAACCA GCTCTCCCCT CCTCCTCAGG ATTTGATTTC
  CTTCACTCCA TAGGGTGGAA GAGAGAGCAA AAGTAGAAAA GAGTCTGGGT GATGGAATCT
  K
  TTTCTGTGCA GCTCAGGCTG TGAAACTTCC TATTGGTCTC CCCTCTCCAT CCCTTCGACT
  TATGCCATTG GTCTCCCCTC TCCGTCCCCT CGACTTATGC CATTAACCAG AGCATGTTTT
  GAGACCACTA CTGTGTGGAC TTGGCATATC CGTTTAGTGT ACTGGGCACA CTGTTCATTC
  CCACTGTAAC TCAAGTAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115443	NES09279368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27954824					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115443	NES09279368	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73822921 () rs orientation: forward

Symbol	Name	Function Class
Rr559269	regulatory region 559269	419 bp distal