rs27954821 SNP Detail

Summary

• ID
  rs27954821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73823221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAACCA GAGCATGTTT
  TGAGACCACT ACTGTGTGGA CTTGGCATAT CCGTTTAGTG TACTGGGCAC ACTGTTCATT
  CCCACTGTAA CTCAAGTAAG GGTGACTTGG GGCAAAGAAA TTTGGGTGTT AGTGCAGGGA
  AATGCAGAGA TGTAGAGGCC AACCTCATCC CAAGGAATAT CTGCAGGGTG AAACTGCTCA
  R
  TAAGGACCTG CATCGTGTGT CCTTTCCAAA CTCCTGGGCT GAAACCCCAA CCCCTTAGGT
  CTCAGTGTGT GTGGGTGGGT ATAGGGATTT TAAAGAGGTG AGTGAATGGA GAGTCTCCCC
  AGTCTAGTCA ACGCACATGC ACAAGCACGC ACCATCCCCA CAAACAGTGC CTATGTGCAT
  CGATGTGCGT GTATATGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38115440	NES09279371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G		G	G		A
ss320346306	CHEV_2_73830934	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27954821					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115440	NES09279371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73823221 () rs orientation: forward

Symbol	Name	Function Class
Rr559269	regulatory region 559269	719 bp distal